Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000206 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38088
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (65.06%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

38088

Total Scaffold Genes

83 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (65.06%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F002406	Metagenome	562	Y
F006220	Metagenome	378	Y
F019834	Metagenome	227	N
F024557	Metagenome	205	Y
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100020623	F002406	GGA	MADRLRDTLSSEYDDETKDLIIRAFMQGLFQQPAIVEELKSSSLIESDYFEDED
Ga0247723_100020624	F019834	GAGG	MKELKFTITGTIFVPDDIEYEYNFENQIYSFKINDKTYSLIAGLEADEKEIIITDENFKSHDLGFFEYEDAFFED
Ga0247723_100020651	F024557	GAG	MDSQVWIYFSKTGIGYEMAGTDIISGIDAFLNLPETYIIEYSFSDLKNDMYFFIYEWDNSQKKRRTVFEGYKKETVLMGMVKHIDKLPSNIKEKIISMYYNDDEELELEKNANS
Ga0247723_100020652	F001561	GGAG	MQTREQKLKLLKKTIETLWHGVSDTKTGDYPRIVNLYKEVLKIEPKDRDAWENMVWLMWSLAINNKDTAWLFEAEKFAKRYLSIMPNGYRSYEYVGMFYRSMIKDEKLAVRYYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTLTRFPNDPYAKSKIEYLTKK
Ga0247723_100020660	F006220	GAGG	MKKQKYIESLNLASGTEMMRASQMRPATFKDKSKYSRKTKHKKVENND
Ga0247723_100020668	F103250	AGGAG	MHKIEINTQYGWATAKFGRYANGHLGIQLYQEGSPLSKISTNIPDTKLEPREFHFNSNDAGSLIDDVLKSGHFEDTGRKDKSGWCDYPVFKVKDHVEIIEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000206

Overview

Ecosystem & Geography

Associated Families

Sequences