Scaffold Ga0247723_1000200

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000200
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38477
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (68.00%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014135	Metagenome / Metatranscriptome	265	Y
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y
F022413	Metagenome / Metatranscriptome	214	N
F029748	Metagenome	187	N
F030080	Metagenome / Metatranscriptome	186	N
F030431	Metagenome / Metatranscriptome	185	N
F030669	Metagenome / Metatranscriptome	184	Y
F030988	Metagenome	183	Y
F036228	Metagenome / Metatranscriptome	170	N
F044496	Metagenome / Metatranscriptome	154	Y
F047055	Metagenome / Metatranscriptome	150	N
F067732	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_1000200100	F014135	GAGG	MSNGLTIDYDTADRITLLNLQDQLKYLRKELEDYKEGKWLHPEDVVNNVKIIAALELLIPYYGGTP
Ga0247723_100020016	F021534	GAG	MKTKVEEKVIYFLKELLDPEGFGWAVTDEVRREAHQLLIMIESESINEQDSTVRQTA
Ga0247723_100020017	F020540	N/A	MSKIQQFGRLHETFDPSNKKHRKIFHDVLRYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGKYYIEKEFGALIDDDPFISGELTRSRPNPCPHIRKKLK
Ga0247723_100020032	F044496	AGG	MKKILAVAVTALIATSAFANDIVNYQIVPVIKVDPIGSMRAISAPRMSCTNVEPVEGAGAPVQTQQQKCVTYSDREFRYNVTAFNVTFEYQGQIRTVKMNYDPGNAIRIKTVTKVYAVE
Ga0247723_100020033	F047055	N/A	MKKTCTLHSIIATLFLCNVAHARVVLVEDSSTKDGYYMAKVINVKPIIEKVPYMTTKNYCQKQYGTTHYSGPGTNTLVLGVTPPLSTPTCRLVNEQVYQNVVRGYQVTYDFKGTLKTAILNNEPSEFVQVYNAP
Ga0247723_100020034	F030669	AGG	MTYYIYGAEDSKTTWKAETLLTVCRRDYKLFLLGQDYTIDQLQILVPNTDFVPHIYHGAKYIGGIKELYDYLYSEVKHEKQFQNETKE
Ga0247723_100020047	F067732	AGGA	MKIETAIGILNKEREFLGMGFLELLQDIQLEGKMVYSEKTMEAFERFMVDGRKMFAPVAE
Ga0247723_100020053	F030080	AGGA	MYIDGMGPRQSMAVEILDTVRFGGLDKIKGANGYSKKRLDKGDAYVVPFGLSKNIFGAVVISAPKRLYITYRMNSKDKTVRMTNAWEVKRFLVKQFIQNI
Ga0247723_100020075	F036228	AGG	MSDGGKGSAPRPFSVSQEEFANNFDAIFRKNIKAAEEIHSDKGYELGTKEGYEEFNKKRQDALDKLHTANEELGLYDDEYEAIHKYNEETKEVKFRQLNK
Ga0247723_100020088	F029748	GGA	MMKFLCGCAVGIFLATAGTSGIAMLIDSSVSKFQNTIKESVREQPPRQNNQQMKMESI
Ga0247723_100020089	F030988	GGAG	MKHWSELTDLESAIIRVGEFKNLFKLLVAGTENYVDIKVLQSAIYTMDGMIDDIDSTLYEKFQTVWDCVKDDLPVELVDTENNYQFENGQPFYDNMNFTSENQGSTVTITSNEEDEAFKDLENAIKNWHKATP
Ga0247723_100020094	F030431	N/A	MSDIEIEINELLDTTVMLCEEIAEQVGCPVEWVEKIVEKRWNDMLFSNADFMNGYDMAKENA
Ga0247723_100020097	F022413	AGGA	MLLAKPKLTNTLDSKQFETFTECQEYLEAYTDTAMPLVEWIAIGKILVAETMTTPEFYPKKVKGQIVMTKFDIEEFA