Scaffold Ga0247723_1000197

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000197
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38646
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F012451	Metagenome / Metatranscriptome	280	Y
F012663	Metagenome / Metatranscriptome	278	Y
F035228	Metagenome / Metatranscriptome	172	Y
F071029	Metagenome / Metatranscriptome	122	N
F080900	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100019714	F080900	N/A	MKKIVSEIHGLTWTLAGTGMVLITLSGSTRRFGIQITLVAIVVHMVGAILGDKNE
Ga0247723_100019719	F012663	N/A	MLENELLFNLRNDSCITMMQFMCKNCNNLFEADEKPHRGEVCFKCHIKTIRLGFTHGKEDFHGPTIRERQRQIVSDAAANGITAEPVTNWM
Ga0247723_100019720	F001396	GGA	MSSVWVPIIVAVITGPVVVVLQKLRKENTQQHEEGRILLRVIGNKVDKIGSKLDQHIGWHDGKKESK
Ga0247723_100019729	F012451	AGAAGG	MAYQTMTATELRQTVRDITDLDVDDLPDSLLNLYIRDGYYRILDLEKRWNFLEKSFTFNTVAEQKSYRISSFTSDPISEVVSIVDPSGVGFRLDMVGYDEAERTYIGSYDTSGDPLFYAVWEGSIHLFPKPESARTLTVRAYREPTDWIGEDDVVDAAPSLHFSLVYYACSRVYQRLEDTSMAGEYKRSFDEGVSLARTAIMKPTSHAHMRLSAGKTTGRPTFNGWMLNMGRNLQDNA
Ga0247723_100019739	F035228	GGCGG	MSKNQSDYDIPARKFDFHTDLRFGKKGEKLVEDFLDAMSDGSFEVKTDRYRNGRMVLEMTHNPRKKVDEEGKALWKPSGLAITKAKWWVYVYTLDGSFVIVSTDRMKRYLKANKERFNPKKYHGFAMASSNPSKGYLLQPEDVMDMMINTEYDEIRTDK
Ga0247723_10001974	F071029	GGA	MLDDRQQKFLEWLCTPPNGRVPSSEKNYALQESMDDSTLRRWKKKPSFKAAWEKKVSELQQSPERTQKLLDNLYERALSGDNNSAKLYLQATNRLAPMQVNVEHSQKTSEITDAELDALIASVAHSEIESRKEQKQL