Scaffold Ga0247723_1000192

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000192
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39331
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (91.80%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001706	Metagenome / Metatranscriptome	648	Y
F006544	Metagenome / Metatranscriptome	370	Y
F008808	Metagenome	327	Y
F011647	Metagenome / Metatranscriptome	288	Y
F018684	Metagenome / Metatranscriptome	233	Y
F020684	Metagenome	222	Y
F050167	Metagenome / Metatranscriptome	145	N
F100395	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100019211	F100395	AGGAG	MTDYIFTTPVVEEGPIGKHRLFYFYKMDRGISIVKNSGTYSKVRFPLDESVADYDEFYLGGHKHIVDDVTKSALIASGLGITEANFTLA
Ga0247723_100019212	F001706	GGA	MAYHWQDHPVEVEGCFGCKVINLQVNAGDAKRDIPDKKWNAELQAYRDARAQGIQPAGTTMRHVEEAHKASEILGKAYNADTMPKTKDITPKAAAVMKEIGQI
Ga0247723_100019216	F011647	AGGA	MSSGQRKRHDGWNKSIMRDGVVVILRKDGREKMRLDPKTKEQLKGTK
Ga0247723_10001923	F006544	AGAAGG	MTTLAAIQGDGWCVIGSDSRSSDESGRPIEMATHKIIENNGVLIAGSGSGRGSNLLQFGWKPPRPKLSEDLDVFITKRFIPSMRKLFIDAGYDMKEDGDHASHDSQFIIGIRGILYPIFEDYSWDRDVRGVYYSGSGSDIALGAMEAYRVRSADDAYKAEKIIRKSIEIATNWDIYSSGPIITKIQYSK
Ga0247723_100019237	F018684	GAG	MANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGIGDYSTQISSVQQKVVGAYTLAPLSTTSSTIGTKPLVSSPPTQVSPAPGTASPVCKHGARIWREGISKASGKPYAFWSCPSPQGTPDQCKPVN
Ga0247723_100019240	F020684	AGG	MEIITLYSLTTQEEAIAVEVGYQRQKPYFGDPTRNVNYSEGDLWELWQHAVAAGSELAFARMIGNTTFTPHFNKWKSELDIPGLGEIRYSFNDQPKLRYTSRDDDSLIYILMTDGMRHRTRRTAPDWLGTPYKAAGWLYGSECKSDEFKYNEKSWYVPVQYLKSMDTLPLEYVG
Ga0247723_100019243	F008808	AGGTGG	MSKEIPPCPECGERFENVFEATDHLLEDDEEFDPALVLPNGARLMIGSLLRCLFKYADKPEQVRSITQSTYMTLFTAETQPEAIKDIVDEMIIESQMMEIDDELKQLLEKGE
Ga0247723_100019256	F050167	AGG	MTTTTAEQIENYLASISLTLADLSDELATIQFDLDDANGYEPRGTVLKALPNQSRFKPKSVWVSLGNGKYQHLTGEKGLIAKHSRLDGYTSVVFRP