NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1000170

Scaffold Ga0247723_1000170


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000170 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41342
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (88.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043362Metagenome156N
F055468Metagenome138N
F065717Metagenome / Metatranscriptome127N
F073466Metagenome / Metatranscriptome120N
F100733Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100017019F065717GGAGGMSLHQLRTHPEFVEGCFGCKAATLELHPGDAAHMREIPKRKWDAELNAYADARRQGIQPAGTSMKAVKDAVTASENLGKAYDGGTMPPANRLANKQVAKAMNKMGI
Ga0247723_100017024F073466AGAAGMPYGFAGSTLVDELNRLANGGGSYPNRNVYQDAQGAANKWAGTTGIGLLGALNKKASAGRSAADYKGLNAVCNELAGTTGLSAIPALREVAS
Ga0247723_100017035F055468GAGGMVLENAALAATALAGIVIVVSALAWVFKNWLKNYLQELKPNGGSSLADSVKRIEHRIDFLTEEMINHLKEHNGN
Ga0247723_100017049F043362GAGGMRMSNDTSGVGTGAGTSDESGVQDSGAQQANGNDNRKAPTSFFYDHPAVTDHGSGIALQDLTSFMESFNDYVVSRIKGVGADQYMKSTGQLFETFSVKETVDELLAELADTIAYTNFIAIKVIALSNAIKDKE
Ga0247723_100017066F100733AGGMETKQQKKRTYIERFACSCNGCRNYPTRPAEIWHESQIAEKENGTFYFKPQTMRFFNSKIADFKGVKVLGEVESLSVIVSSRYDKGAQRYYEIVILCPYGTIHRESKKFETLSKARKDWDATISGFVPCECHGCILDREQI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.