Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000139 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45547
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (91.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

45547

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (91.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F001599	Metagenome / Metatranscriptome	665	Y
F012770	Metagenome / Metatranscriptome	277	Y
F033006	Metagenome / Metatranscriptome	178	Y
F085348	Metagenome	111	Y
F105020	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100013927	F085348	AGGAG	MATPTGIALKVTDKQGRESFPAYEAYGWEKINAVIQGTLDIEHVAKVEIVDINFKA
Ga0247723_100013935	F033006	GAG	MQWLENGFFDHLDKFANSLGYENYEIAIPLAMVKWKSPEDRDVFIMTLTNQDVKGGGAHNFNPLAVK
Ga0247723_100013942	F105020	AGTAGG	MHSHISKVLEWGFSETHDFVATLWGCVLCDQTSDKPFSEEEQIDIDHTACDEDCFGCKVKGLQLNAGDATRDIPDRKWNSELAAYREARSHGMQPAGTTKGHIEEAYRASEVLGTAYNADSMPKSKDINKNTAEVMKEIGAI
Ga0247723_100013948	F001599	N/A	MVDGKFMQGVTDVLLKSGINFTSTLRSQGNQIARQRETVIRYWHEQDKSDWLLWVDSDVVISPETFLKLWNAKDKDQKPMVTGVYFTTDNPEEPLMVPMPTLFNFADNKDGGFGLVRVHPLPKDKLIQVGAAGMGFILMHRSVVDRILKELPDTQLFMEMGRGTKFIGEDIYFFALCDKVGIPLWCDTSATAPHMKRFSFDEHYYNAMTKRR
Ga0247723_100013970	F012770	GGA	MEFDELEPPESYCHECKTQFENSFELIDHTLEDDEEFNPYYVLPNGFKLLLGSLLRFMYHHRDEPEKIALITQSTYVTLFASEMGYDMVDELVEDMVVKTELQNFDEELKKLLTKDDDGEGGA
Ga0247723_100013972	F001515	GGA	MASKSSFDLDFGYGRKGEQLVDELLSGNLTVEVKRDRKWFKTNNLYIETECFFQKVGDWAPSGLGVTEAGYWAFVLQESTLIVPTDVLRYAVKEFGREISCFIPPNQSKGFLITVDDLMTATRKYKDDDRVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000139

Overview

Ecosystem & Geography

Associated Families

Sequences