NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000109

Scaffold Ga0247723_1000109


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000109 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50439
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (89.06%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F005476Metagenome / Metatranscriptome399Y
F009203Metagenome / Metatranscriptome321Y
F021992Metagenome / Metatranscriptome216Y
F053243Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100010913F053243AGGAGMDKKQVKAIADTEVKAHEKRLHPGVKKMKAGGKTNADMRTYGRGMAKVMNQRSSVRGG
Ga0247723_10001092F021992GAGMAMQYDVKATHRNSSGSIFGARARIKGFSICATASLAGTLLLKDGGSGGTTVIEIDIPSNSNPNSFYVSVPGEGVLCTTNIYASLTNIASVTVFYG
Ga0247723_100010924F000220N/AMSDEKINHNSLIDKVLGYVDSPFKLFAIVLMAVFAFVGYFVWQNQEFLIGAYKEQKKLPTIAEDRVEDVAAHLFKNTDAVVVAIFKVNPIFGTRVLHRAYTKDGRDKTHEGLDVGLFTPNASNNRDVVALMAGEIPCSAYKTAQSEIGLWYIEKGVTYGCRVSVPPEQGKFVGQITVGWKEEPPDVDAYRVLLQIAATMLSRSKQ
Ga0247723_100010930F005476AGGMDLVIHPVDTHLVYQVWPHASKFIDEALRKSEGTEDYNIHHIQMFLTSGQWLLLVAVDEQHQIHGAATVSFINYPLSRVAFVTAIGGKLISNEETFDQLKAILKARGATKIQGFGRDAIVRLWKRYEFEPKTTLVEVLL
Ga0247723_10001094F009203GGAMTEKTETVKNVLDFVAVFTAIGSFLQILTPVFGLIGAIVGVMRIYEMATGKDFSTLWRKKAEDAEHK
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