Scaffold Ga0247723_1000107

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000107
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51271
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (82.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001106	Metagenome / Metatranscriptome	776	Y
F008245	Metagenome / Metatranscriptome	336	N
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F070122	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100010716	F000376	AGGA	MSEYQDRAKDCKCCSKHVPLPTVLREYNGIVVCPTTFANVLEYKRIWDSYGSRPMGSIRKHFSEYVQELVEGSLKQ
Ga0247723_100010719	F000369	N/A	MTELEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLEYVDEWKSVVHNDMNMRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNIKAASLKLIADIETKRIAMLQSVGVLENSQIASQIAETERKQELLVGILKEVTAGCPKCKMDVAKRLSQITGVVESINVDEVEVITNVQ
Ga0247723_100010724	F008245	AGGA	MAEDKNTLQLISDITEFNDLHEYMQDEHLDKALAIVVKLLMTPDVPSSKAPTLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS
Ga0247723_100010752	F009961	GGAGG	MTVDYKIDAMFELRKFLWKQLKTTGIFDAYDYYSDNLGTEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGMSYEENWLICCEKVLFTIYSTDVTEIYEIRNLMMDLFRRMDESARDANKSKDTNKLIFHSIHVVETSPIEPSAELKGFMSTDVILEVKYSRTTDGTGRFD
Ga0247723_100010753	F012456	GGAG	LDSSTALIQTASGLERLMAGSAPGVLKDSTVAQISAFLYYESAVLSRLTTNAEFKNLFKTTIFNQIEKDFGEYIDSQARVKPRSLHHVYEWNKAGVPTARLFKLHTIDMGGLSFRINYDFKLSKSSVPSKNKKQKKKYIFANKASVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVKKPGGAQASHQFSLSYGRFFGGQLVNSSIKSSGLQRIFNSKMAKALGVPMNIRKVQYSFSPGKIRSQADASLHAAFGGSL
Ga0247723_100010754	F070122	N/A	MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCAAKGIISNSGSGRGGDKQTFNNRYMNEQMLEIRTPDPITYREKITNVRDMNGNVVCKEINYPNNNPTVFEIISSTPITDPFGNVLAYNSVAKRSENQEIGF
Ga0247723_100010756	F001106	N/A	NMSFDTLKVAELKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAIEKDTEEIEILPKFDPKAQPEDTLLVRMTRDNMRYDIHGRTFTKDHPFVAMPEEDAQQIFDTEEGFRLATPKEVQDFYN