NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000097

Scaffold Ga0247723_1000097


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000097 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53357
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (71.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007415Metagenome / Metatranscriptome351Y
F046378Metagenome151Y
F056435Metagenome / Metatranscriptome137Y
F091916Metagenome / Metatranscriptome107Y
F095564Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100009738F007415GGAMPRKYSYYPSFDGKKAQPGTQKLAELCNKRWKATNMGIYVARLMRNSHTEGKKMGDPGMEKWMSVHATGAAVDLGYPDRKTGVEMWNWFLAHTKELGIEEIHDYAFDTNVKDKVQGYGRGFRCSRGENEAGVKIFTKDDNAGSFGGQWLHVELSPEMAKDAAKFEAAWRALPKPDA
Ga0247723_100009740F056435AGGAMNNTKNILLRILAVFGASGLGVIGAGSIAGVNLPQAVLMAGIGGVAKVVEGLAKAFLNDGKLDLEEIDEIFNGPKSQPQKDI
Ga0247723_100009751F095564N/AMSSDIIKNKKIWVPERAYGVCIWILPDGLPLSDGDGVLSAEGLMNDPKVEKSVSQAAKYWTGTNEGTIRWIAGARKISSSERDDQAERLSNGLIADPYEDMYDAYFAHQRSI
Ga0247723_100009758F046378AGGAGGMLMGRVIPDFPYPVKICPYCNKQLVVVNAIHWQGDQYQFKAVYLDPNPVCPVYDEEAMQAYARIYYSSEDAFAYFRDIQIPVQRWSRDELYSVYQ
Ga0247723_100009760F091916AGGAGMKYTNMEKMIEDNTAMKNWHENMAKASAEAMQDHIKAAAWHNSQSDLLKAMMNEVPLDPEKKVTSIPMAGSAPTPTSGAGKTAPTKEVALDPENVKKSELIAVLKDHANQIGNLDADIDAIANFLMK
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