NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000083

Scaffold Ga0247723_1000083


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000083 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56524
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (83.00%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Associated Families18

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005558Metagenome396Y
F006261Metagenome / Metatranscriptome377Y
F008607Metagenome330Y
F011482Metagenome / Metatranscriptome290Y
F014841Metagenome / Metatranscriptome259Y
F019308Metagenome230N
F020531Metagenome223Y
F024770Metagenome / Metatranscriptome204Y
F025725Metagenome / Metatranscriptome200Y
F027488Metagenome194N
F036203Metagenome170Y
F043899Metagenome155Y
F049581Metagenome146Y
F054812Metagenome / Metatranscriptome139Y
F056549Metagenome137Y
F057363Metagenome / Metatranscriptome136Y
F058789Metagenome / Metatranscriptome134N
F066709Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100008311F025725AGGMSKTIIDDTVDVLIAMNLTVTKVSTPPGYSGLQVYLPNDTQAFFIWAKIDQEDYHFRMARFWQSENPFSMWIAPNLIQALAKTRVLTNQ
Ga0247723_100008322F058789AGTAGMGLPDFVNNAPCRSADPWLFDQYQIDLAQPALSYCARCKFWQECDSLVQPQTNHYDGIVAGKVWRNGRILAKLDATSPNRLVVGEDSIEENSYALEVRGSELLGNRDELLLPE
Ga0247723_100008324F014841N/AMEEEKKPSLIDDALAQIGRIAFIEPAICTGWVLVSEWMGEGEKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGNDDVGLRDKPNNE
Ga0247723_10000833F056549GGAGVAEPYVPIADYTTYNALLTELEVTTDSAETNADALDLAVDNTLVHKQTAENAVASKFDLFFLVGA
Ga0247723_100008336F049581AGGAGMTKQEGRPFDEDVLIDQIGRMNVFAISGGRVGVTKNNQGETVEIELPVGYGYRVSITLGWDDTYTVSRQFVRKGVVTDKGTIEGVYCDQVGEIAYKASCFRNVEFGKAVA
Ga0247723_100008338F005558GGAGGMTEESMSWGDIANLTHATQVEKFNFCTCEDNEGNENPYSDCPKREG
Ga0247723_100008343F054812GAGGMNEQEVNKKFDDLVQPKIIQQVIKQKREPAKFPELRYLWGVALLGSFVLIVISAVVSTILESL
Ga0247723_10000835F024770AGGAGMAVSHARVSVGTTATKLTTDYDGKDGQTINVQNPAGGVDVYIGGEGVTTTDYGYLLKAETNFSVELQDDEKLYAVVTTGTQTVNIIRQGT
Ga0247723_100008358F066709GGAMEYESVNRSDWDLDLRFGQEGEVLVNNLLTAPIETVEVKRDRRWKDTGNLYIETECWSDVLGCWYASGISVSKASHWSFILEDSVVTVPTDRVRLAIAKHGLKREMNRPEYSTKGYTITVAELLKVSLRPHQSASQSQPT
Ga0247723_100008369F020531N/AMSLSDIAVLVGFIGIYDLRIQVDELKVRAWAESFDSDLPLQEAKRIVSWHYANFDTAIQPSHINKEWRRRMSDEREREKSRLLSLEFEEREKQKASPEVIAKWKKEFRDYMERNRVTDAPLETDSGTVAPDA
Ga0247723_100008370F027488GGAGGVSIRWITKVWADSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMVADGHIKIITKGNSRGNATVYQLLWKKLPNSVGDEQSLGEVELPNSDTLDSPTLTASLPNSTPYHPSYTSVLSTTKSDETAVAVVALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRGYQAEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIELSEKLRNESV
Ga0247723_100008374F011482AGGAGMRRLDDLTMEVKQMNLNVSQTYLRKDVYESDSERFSQAMVHITDRLEKMESRSEWVVRTVGGLMIATIVGASVYVGQIIGF
Ga0247723_100008376F057363AGGAGGMDSKTKAMLASYGRSFLAAGTTAFMITGGDILALDGDSLKAILAAGVSAVLPVAIRAANPKDPAFGKIADGVTEAVVKKMTAKKSVKKK
Ga0247723_100008379F006261GAGGMATISSGYTTSEPILIDNPAFWSFTAPESPTISVTNIIVEQPLNQNIVESYGVFKPLGASKSVVVAQSIYGVDGTYQITVQGEDAWDALYPVLTYQGTLHVHDPLGRQKYVRFVDRSWTESGNINNLIRVIKVTYFEVDAP
Ga0247723_100008391F043899GGCGGMNLDDALDNLLKTSEMNSVQKTEPRQRQAEWLPGVTWQGEEGTVTTQPMEGDNAPDWSGVLRMWGLDPKHFQVVEPVLFNVWGDTLGILNRQWKGKVVRKGKQEFADIEALIQEIKKT
Ga0247723_100008392F036203GAGMAETQQPMSSKDVGNVTGSSSKAQPARGVSDVQGVNLKINQVDLFKELDFLVGKGRQQDGCSVGQMVNKLDKPLRDKLNEIFCNTKVDSASLKKVLDSYGLAVSSSDVLRRHRRRLIGKDGCKCPIENSAVPLK
Ga0247723_100008394F019308GGAMAKSSFRLDLFGDKELVNALEAGKENTPQAIAQAIWEEANMIFAKSQILVPVDTGVLRGSGGVSAPQMGSQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIEKGHRG
Ga0247723_100008395F008607AGGAMDAIYPKVAEFMTDSVVFTPKASVDKYNKPTFGASNTNVTVTGRLIYDTIKSKDVQGVEVVDIGRFITYGPATSITVGHRMVVGADTFTINAVDNLADENGAHHTVIRFGR
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