Scaffold Ga0247723_1000078

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000078
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57883
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (16.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021966	Metagenome / Metatranscriptome	216	Y
F045102	Metagenome / Metatranscriptome	153	Y
F103119	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100007834	F021966	GAG	MSTIHELKSTIPVHTPHGVGEALMIIDYGLNTNSVWVVRVKGGRVLHYYSDDIRVYDNPMNGGGWDVDIPEDWIK
Ga0247723_100007852	F103119	N/A	MKEVFKDAALQSAFERAVTSYESFRSVVAKQVDCANPSEIIAHMTELTGVMTIGATCKAQFQFLTEKLSFQKMMNLNNDDMSATEKKVIIAYEIGDCSFYNNLCEYLIKEAHYKHDLLRSALSYCKSEINMI
Ga0247723_100007874	F045102	N/A	MDTAQWLGLAEVIYQYIDQAKLTTAEFRRLWTIGVRGVEEVGMDVHATPKTVKLLVNANKTVNLPSDYVGFSKVGVFNSDGEVSTLRRNPNLTAYKIDQNDRLSNNTDNTETNSYRLQDLAFVNYFDGARYVNIFGAGAILNAAGEFDISEDEGILYLDNNFPYTYVVMEYLSSPADDVDYKIPIQVREAVLSYIAWKDIEMLPSGRRVNMGEKQLRRKEFYNQKRLARLRVNPVTPWDANEVIRMGQKLVAKA