Scaffold Ga0247723_1000059

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000059
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63339
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (77.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025980	Metagenome / Metatranscriptome	199	Y
F031360	Metagenome	182	Y
F089955	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_1000059102	F025980	GGAG	MIFKIHSTNMDGQVIYARIDDDGKCRLTCTEDYPEFKAWLAEGNQPLPAEENT
Ga0247723_10000592	F025980	GGAG	MIYKIYSTNMDGQVIYARIDDDGKCRLTCTEDYPEFKAWIEAGNTPEPANEETQ
Ga0247723_10000593	F031360	GAGG	MNEIKLSTNLVNAVLQYLGTKPYAEVFQLIEVIQKEAKDQNQPDITPS
Ga0247723_100005993	F089955	AGGA	MEFLRITATDGTRQYIPDNYVANIATTADGTDAGSAYRAPNVTRGRISQVKYYDGANGTAGALVVTAVSAYASGGILYEYGCFTIDGAFSVALRN