Scaffold Ga0247723_1000054

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000054
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64604
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (93.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F001817	Metagenome / Metatranscriptome	630	Y
F020493	Metagenome	223	Y
F045610	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100005416	F001817	AGGAG	MGMQTDVLSAHLSAAGTLYTGRTRLKGIIVAPKASTAATFEIRTTSATGPVLFTMDIASLGTPNTTCIIVPGEGILASDGLYLTTSVGTVTGITVFYG
Ga0247723_100005420	F045610	AGG	MKHEDIKKDMPMMKKVANKAVMGHEKRMHKMAKGGTASARADGCAQRGKTKGTMVGMNKGGMTC
Ga0247723_100005442	F000340	N/A	MNIQDILKAVLPVIVAALAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEKRHAMKEEIYRDIHQLQVKVQLLEEREKRK
Ga0247723_100005463	F020493	GGAG	MRHFSWAICMWIVFCGLIVYLTELSRREEVYKLNCELLLGGWHPDVPKDYAKLCEEAKQMRSSR