Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000052 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	65465
Total Scaffold Genes	108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	94 (87.04%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

65465

Total Scaffold Genes

108 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

94 (87.04%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000980	Metagenome / Metatranscriptome	814	Y
F002622	Metagenome / Metatranscriptome	542	Y
F061853	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100005228	F061853	AGGAG	MNKKAMALVGLIVALVAVAYATYNSLSQLKDIDYDLFDTEEDEDD
Ga0247723_10000523	F000980	GGA	LICETPAILKASFLCYGSQIKSPETLVNVSGQVYNTRMTTYNKYTWVCTGDCDALIEYTYKDGFGWPNGVTQLTCPCNSTCTLLSVEDVTIPYTDTPINETKGNQMEQTTTPAVPDTYNPNLLVTYKVIRGYSDAEYQTDKVTSIEWDLHNARQAQKTNAVLQGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENEYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA
Ga0247723_100005260	F002622	AGGAG	MYEDEEDDADSRLAYYLEIGAVSLEGIDESGEMIFAISENAKDIAPELWQSHIEYVDKSLMELYEAGLVEVEYDENLEATIHLSPEGQRLAKEKGLIEIDIPEIPDN
Ga0247723_100005262	F000376	GGA	MSIYQEKAKECKCCGKHVPLPTVLKEYNGVPICPTTFANVVEYKRIWKTIGSRPTGSIRKHFSDYVQQLVEETIDKNEDGTLQ
Ga0247723_100005264	F000369	GAG	MSEIELADHFDRMNVVVSELLKGSNPTQIATITGFKRAEVVELIDEWKSVVHNDTAARDRAKEAISGADRHYAMLIKEAWKTVEDADQAGQLNVKATALKIIADIEGKRIGMLQEIGLLDNAELATQIADTERKQDILVKILKEVTATCPKCKMDVAKRLSQITGIVEPIEIVEEVSGP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000052

Overview

Ecosystem & Geography

Associated Families

Sequences