Scaffold Ga0247723_1000011

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000011
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118602
• Total Scaffold Genes: 176
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (17.05%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005147	Metagenome / Metatranscriptome	410	Y
F014593	Metagenome / Metatranscriptome	261	Y
F016783	Metagenome / Metatranscriptome	244	Y
F026002	Metagenome	199	N
F032200	Metagenome / Metatranscriptome	180	N
F033777	Metagenome	176	Y
F053905	Metagenome / Metatranscriptome	140	Y
F058808	Metagenome / Metatranscriptome	134	Y
F067542	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_1000011106	F005147	N/A	MKTKGIKAMMTALKAKGVHVCGTTDEFYSTKNENNGIWISAESTPSLFDYWSEEWGDTFGVNPKLNTMVEDSGWYFEWQDPGTMMVWES
Ga0247723_1000011108	F032200	N/A	MTKKKYKSGKLTPMTEHILVDALKLWQQEFIKVIKTQDDGKRSMFHPNWTSLQLREFGIEFGIDELINVEFITD
Ga0247723_1000011114	F053905	N/A	MKDIFTGYETVSFYDARALATLMNAYSESSLCSDEPLHFGYNTFTGYYYIAFENIGLGIVLTPQNDVQFATIDFETGNEEFFDTEKEAMEHLKELDNPGMFIDDEEWEKEMGR
Ga0247723_1000011119	F058808	N/A	MVMEKLDRVKELIIKEVKSLSEMYEDSVFDLTEFNETVNKIDDLDKLDDYVTDYLYSEEILEKEYEVADFWKYIFKEVAGLN
Ga0247723_1000011133	F033777	N/A	MKIERYEQCYEFFITPAVKCTYNKMLYGYYAVEVIWGRWGLSLSWGHIKE
Ga0247723_1000011135	F016783	N/A	MKNLLTILGIALVMSSCSTSNFATHNIRTTPSITRQALIYDDHVVLVTKTRMSVDEYNRIVAASMQNEEGHN
Ga0247723_1000011160	F014593	AGGA	MNPKKDFKKFFQKMFDTPVEIQGEILTPEETIKKNFVIFVNNYKTAVTRSQEINDKFGLDLWSWEDTFAKSLEGLINYSFTPESVEVILWYVYEHSLAEDEEDKIVNFGDEAFVIETAEDLYKLICLVEE
Ga0247723_1000011162	F026002	N/A	MEQKLKLEFPLDLEIKYEDPEELLELATQEEFVTFMFGSAVAAIKQAIRKNKSECIVFSIQNYNVRVVIKKEHYKIFLNKAIKHYENLEDYSRCSELVTLKSRL
Ga0247723_10000115	F067542	N/A	MGLLDKLLDPNAVGGTLLTAYHGTTPQINPLATKQSKLHAFGNDAGYSVNGNFANTVSNNFTAYNDGYNNALPQPSQLDLNGKTPSKYLDNPPG