NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1000003

Scaffold Ga0247723_1000003


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000003 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)173789
Total Scaffold Genes254 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (20.87%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008881Metagenome / Metatranscriptome326Y
F014119Metagenome / Metatranscriptome265Y
F015596Metagenome / Metatranscriptome253Y
F059772Metagenome / Metatranscriptome133Y
F061681Metagenome / Metatranscriptome131Y
F104786Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_1000003152F014119N/AMKIEREKVMNLLKPAMNLIIVAAVGTAMFRLGIAYQSHESKENIKVDNPYAHAFSPEEISIAVNESNELIMIERSTGKYIVYSDQIGQTIFGMYANRIHQEVTNVSK
Ga0247723_1000003154F008881N/AMKEVVCINDKNLPEGAAVVKGREYNVVEEFINNYDQRVYIIEGIVNEGTTKMGLRWVGYDASRFAIPETLMEETYEHAYAEA
Ga0247723_1000003158F061681N/AMKDSCIIDWELYQKVMAKKRTIKVCTGIGLNMFFPEYITIELTDIDTEIKTPKKTKKNG
Ga0247723_1000003182F059772AGCAGGMDNFDLKKYLAENKLNEAVGYVLYNTAGQMISQVGLFTQELADELETEGRGNLSRFFDTPEEKAELIKISEAYPAYLAKVKAMMDELMNDPMYQVAVGDAGRDNALEKAYYRAKNI
Ga0247723_100000321F104786AGGAMLKEAIELLSKFGLVDGNSLPDSTPGHMYQFRSSSPNLIVPAPGMKTTISGFLKDNGFTVKPMGTMLKISK
Ga0247723_1000003216F015596N/AMKPYIYYSKLDSKKEPQGKFSAIDLEDAIEIAAHIKQMSIEDFLTVFTIEEWKKNSKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.