Scaffold Ga0265357_1025666

Overview

Basic Information

• Taxon OID: 3300028023
• Scaffold ID: Ga0265357_1025666
• Source Dataset Name: Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 660
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9989
  • Long. (^o): 10.7903

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054198	Metagenome / Metatranscriptome	140	Y
F105964	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265357_10256661	F054198	N/A	LNLHRYDLQYEKALGVIVPLVEKYPSNPLFQLAKGDLLAKLGRREQALTCYRAAAALHVQDAECRAHIQELVLASLAAQGVGSTSASH
Ga0265357_10256662	F105964	AGGAG	MKRSWTAIAVAFAAFFAATGCNDYGNTFQSNTGAFLQ