NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256382_1104371

Scaffold Ga0256382_1104371


Overview

Basic Information
Taxon OID3300028022 Open in IMG/M
Scaffold IDGa0256382_1104371 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)681
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)750
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003706Metagenome473N
F015220Metagenome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0256382_11043711F003706N/AGSGHMSEVSDVELGKLIQQISTLEVMVKEQNIRLDKLDQQLERTRGIGIGIVLATVGLSGVGASLFTRWLGQ
Ga0256382_11043712F015220AGGTGGMNIDSRVLTVLLFLIVQSATGIWWASNLSSEVQRLAGIQGDAIPALEQEAQKCGIAIHNNEAAIKELQEHDKAISGLDVLEFKIDELRKEIASLREVDREIMTQHEKIFDWMAQSSPMQQKGNPYN

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