Scaffold Ga0256382_1029820

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1029820
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1209
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10298201	F015347	GAGG	MSTLHSRCRRNAKMLLESASTECDEMHHDMAEDAQFPDMDTIYSSAFEMRRFADRLNHFADQLMIEYRKMDHHQYMIDLDDLKD
Ga0256382_10298202	F020384	N/A	MHNKKFHSYQKSLQKLRNIVSETLRSSGHGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPGRVASDRGRDYTNARPASIRWDAAAMMAVPMSGVDRNWWRPPPRPAPVKHYTREELQDEYPAFTVSKKRKDAT
Ga0256382_10298203	F024807	GAGG	MTRRVMPFSVVFHDRDQQLTLALHDNPVILTRDEADALAFHLNSFVMDMDSTRKPKTSVEGADIHAEAHGEMLMAQSDDDPNPYHGDYSED