Scaffold Ga0256382_1015844

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1015844
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1534
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005656	Metagenome	394	Y
F014969	Metagenome	258	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10158441	F025411	N/A	RVYRDRDNNIKVEKFSFEEVKKDLTKLLSHDNRISNRKDKNETKRFNSTIKKI
Ga0256382_10158443	F005656	AGGGGG	MKLKDLLNIQQIVEKRAIPSDVLEFDSKHYSRSKDMTVDILDLHLTHAIRILNNYLNDTFYPEYPDRQQINDTLNVIKDNVDDIREVVNK
Ga0256382_10158445	F014969	AGGA	MISNYPFGKKNDRPNYYYTQDIFGDGQGITGCIKKRKNKNVRIRKIKKAT