Scaffold Ga0256382_1004869

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1004869
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2229
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020878	Metagenome	221	N
F026151	Metagenome	199	Y
F044431	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_100486910	F020878	AGGGGG	MIINLFGKQMTINNKKWKQDLLAWSLYYRTEIVIAVAAFILGAIIF
Ga0256382_10048696	F026151	AGGAG	MKKNLPTQDNVKRLMEQTLRNILSCVGGVYYNKYKLKLERKKKDEK
Ga0256382_10048698	F044431	GAG	MVKIITNQNGAKGFVCQGQFITDPYVTECMRSTVDPKQYYGLNDDELIHFKHLEPLKEEPQPSYKELVKDLKGMKFFIVRWSGDACDHNELFDEKCGCHTSNRVDDPIKFFNEYQYDNDTIKDLKEMELGEKYQVDEMMQDIEIMRVE