Scaffold Ga0256382_1003894

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1003894
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F046014	Metagenome	152	N
F086173	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10038941	F086173	N/A	PCDPLLHFDSKDAGTIEWTWRTQPPEAIYWKTYKPKKRDIKILSRVTPEQRKKVTTELLQSIILTEHPPTVKQTKVRTL
Ga0256382_10038942	F046014	GAGG	MIRKRVYLNKLQAEGLIQIFRRNQLLDLLVYVAIYNKNKSPHYKLCVDCPVDTHPRVSNKLQDILHTLEDRHSKALKQLKWEEYDDAEIPIEQVGLTPDFKEYVKEKEKEE
Ga0256382_10038943	F036930	AGGAG	MTEYTHLVEETRRQQAFREWKNKALYLHLNNGRLETKFQDGRIEIENTSTGKKIYDFPKGYEGEKYKESLFNKFLKVFTD