Scaffold Ga0256382_1003673

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1003673
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2408
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F018196	Metagenome / Metatranscriptome	236	N
F024421	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10036734	F018196	N/A	MKIEDIKKAMEYKQGHFNMVQYILKEKPEWSISVCTKETGEFPVKYSKDYEEIRKAIKDYETEIMVYQSDKRQIGWAWFIPYNDTDEDIVTDYSNTLTLNKWAKQFQELQEELNK
Ga0256382_10036736	F011527	N/A	MLVYFQFRRCGYYAKGLIEADNLEVAEKALWSEHVGTFRWEPALNYIPEDANSLTIEEYKYEPSSDRKTEPEKKFGSQVG
Ga0256382_10036737	F024421	AGGAG	MSLALIEKLNQKRNLEAKWASEFLANGAVTVEMVNISREVKKLEQELKDDSDTTKP
Ga0256382_10036738	F002594	N/A	MAKIPTSRLNSAPVEYKQNDFNQLIEDLQDMIKILNSTYPKDQNDERERQVWLLGN