Scaffold Ga0256382_1003319

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1003319
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2476
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10033192	F084099	GAG	MKIGDVVRMSRTKSYGLGLIQKIVPAGEFPPGNNPRLVYHIRWPDGGISVQYDNEIVLVSRVK
Ga0256382_10033193	F106167	GAGG	MKVGDIVKLHVNPSVDWMHKYLEETFEVIDVPTETGVRVKMVGTDPPWHWIVGKEEFEIVKEKDE
Ga0256382_10033194	F090254	AGGAG	MSIPETNYTAREILEIVDGGEFVAILREKYLVVWDGGNVLNVYDLTDPNKEADYQVLPMFAPRCLLTVHDAIDEYFESRDFDNTNEPLTKPLLGVIVETGSDEPQEAN