Scaffold Ga0256382_1000952

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1000952
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3365
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043614	Metagenome / Metatranscriptome	156	Y
F045140	Metagenome / Metatranscriptome	153	Y
F080506	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_100095210	F080506	AGG	MKLEEAVRIGKGLDLTTVEECVNNIHSFSPQIFPYSKINEELTELYDEYDNYKKHPETWMSALCGMKV
Ga0256382_10009522	F043614	N/A	MKNITLTFERNGSTVWSDGDDHYTYYVHEPTMSKWEILWQYSQCGEHIGSIRKLVTTGSTTSQGGERITWEYQGEVFRFKKLEQGLKVDVDLLESDETYESVSRALATPPPSLEPKPLVPSNFGLPLEDSDTMPDLKENPLGWA
Ga0256382_10009526	F045140	N/A	MIRLLTIFLLSASIAQSVSLEIKVAYQKVTPMDHPYGSPGGIYFEIKDMDPLLPYWVQYSHDFKVWKDLYNFGSFGTNSTSPLFHWYELPPDKCFFRIIQKW