Scaffold Ga0256382_1000150

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1000150
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5076
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10001503	F008105	N/A	MNFFQLQNKLFYSKKENAGELDSEGEQAFVPFLFNRWLSFYSKELPSFVNETFNKFGGIFDDKQETYKLYYYLIPRLKWKKISYIKKKKKEQDEIEGLYNIAKNKNISTREMLQYVELDKNLRK
Ga0256382_10001504	F014794	N/A	MAMASIDNLAPTRSLIDLSDPNAGEVGIDDYELNFIFDDILLIEYVDETEHGDVMKGGIVVPSNALNKAWRKGKVILSGPDAKYAKEGDIVIFPNNMGVSISGVTITGKGKVKKGVFLNEERMFGICKLKDDNTEINS
Ga0256382_10001505	F018622	N/A	MIIQKSTLDTLLQNNVLEVRFPRRIVKPGLAATRRMLCTNSLKLLNSVNGRISLNYFAPKGPPKPYLGPDNLTVAWDILMQDYRNINCNQVDLIQEIPANEDFWIYFNENIYPMSAQQKFNFMNS
Ga0256382_10001506	F018815	N/A	MNISLEKVTDFLKPFLLKDIIIRTDKKVLKKGKFMIFQIKQYYINFTLEINGTNKNYEIPYPYRLQNDEDIGVLNYHISSFIPGRQMTRVKFLDSSSKSKLYDNLVYILPSDGNII