Scaffold Ga0265351_1000615

Overview

Basic Information

• Taxon OID: 3300028020
• Scaffold ID: Ga0265351_1000615
• Source Dataset Name: Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2060
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9992
  • Long. (^o): 10.7901

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043881	Metagenome / Metatranscriptome	155	N
F062584	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265351_10006152	F043881	GAGG	MHRNISRAYYALMAEHHRVRAAHMKIMARGDAMLERKLLRAKEDDEAHIEEVVIHEERLSATQRRRVYKLSSYGRKIEKLIDALLKL
Ga0265351_10006153	F062584	AGGAG	MTEIDDPEVLRREIRTMLEKVTNPGSLIFFQWLVRRVLANYPMPGDEELRALHQAFIRMHATFKAKKRPTKEDMELVAKWTEGDAESMGRALGRAVKFFREKRGMSRLQLAKKARLPIRAILAIERGRVFDLSPVIDNLTVGLSVKAGELTDKLLDFEKDDKS