Scaffold Ga0256381_1015145

Overview

Basic Information

• Taxon OID: 3300028018
• Scaffold ID: Ga0256381_1015145
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1264
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 1600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000747	Metagenome / Metatranscriptome	908	Y
F017655	Metagenome / Metatranscriptome	239	Y
F017843	Metagenome / Metatranscriptome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_10151452	F000747	N/A	MKKLLVLLLLLPLAASARMFPSEFPIKAVCWGGENSVEEAITYHQDVLGEYPIGKGWVSETSFGAIMYNPVKPSWTFLSFHQHEEAVIVCAITGGTQWEMLSPGEDKIIL
Ga0256381_10151453	F017655	AGGA	MTNGFQFSKSLSLGHIVATVGIVIAGFTFIYDLREAIAILQYKGDTVEERLERIQQRTDNQFGQIMDHLERLESKIDEMILERSE
Ga0256381_10151454	F017843	AGGAG	MKKLVFALMMLPMSLFAADFDRIGVDVSAFSNDGVHLGIADSGSLSLGLAGDGYTFTFDQDDNDMAISSYGVELSRSDSKKVGVGYGAGIGILDGGVHYNWMASGDHVVGGGTTLTVGGFDLATAADWNLTASNITGTVGTSMDLWGAQASALSKWDIDDFSYDGLELDAGYAIPVAAGIHITPSVGVDFD