Scaffold Ga0256381_1005460

Overview

Basic Information

• Taxon OID: 3300028018
• Scaffold ID: Ga0256381_1005460
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1980
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 1600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029601	Metagenome	188	Y
F032335	Metagenome	180	Y
F039677	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_10054602	F039677	GAGG	VKIGDLVRYCGDPDDGRLGIVMSEVFDTRPKWHDEYPGVDVLTRHQHTGEEGRYMWMLEDIEVVSENR
Ga0256381_10054604	F029601	N/A	MMKVGDLVCFEAPDDRFHGKKGIIVRYVEGPTYRQGFHYEIQTFCGHTIIALSFEIERLENEYHIPN
Ga0256381_10054606	F032335	N/A	MKVSELKEGMLLRFKEPRIYKYLRDSGDDFWLDCGALDPNMTLKWVQTGQPLMIYLGQEQMDGPSYYGGYFNIRKVSIDGRLAWMWPDAWRYVEAV