NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256381_1005178

Scaffold Ga0256381_1005178


Overview

Basic Information
Taxon OID3300028018 Open in IMG/M
Scaffold IDGa0256381_1005178 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2020
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)1600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064800Metagenome128Y
F092212Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0256381_10051782F064800GAGLGWGETIMGTAMYDALDDMLSLLKTKWGTTDKAGTFPEIKIIWDRKVVGLANYTQDTILLTPKRENVEYFGLYGSDFMHHVDIQIECWTYMSQDRLNDLVKEVTKIIKDNIRRTNFVDLMITGSLSQSDTYRNIWKHVLQAKYRKVNPS
Ga0256381_10051784F092212N/AKIEIWEGASASYTNILGDEQWYDMDYEYGRLYLRGFIFSILRNNRVRVTYRYGGEQFAGDTTIPGDIADCVIKMVALEFVNTSFRMDKLPMGSAGVDYASSKRQWTEDIEKCIENRREVFPIP
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