Scaffold Ga0256381_1004927

Overview

Basic Information

• Taxon OID: 3300028018
• Scaffold ID: Ga0256381_1004927
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2058
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 1600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012463	Metagenome	280	Y
F027156	Metagenome	195	Y
F048570	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_10049273	F012463	GAG	MKIGDIVKLIAEPQVDWMFNYLEATFQVLDFPTETGVELKMIGSVPDWIWIIGKDNLELADEEG
Ga0256381_10049276	F048570	GAG	MKIGDLVRCRPRNDRENYDAWLGIIIGEPAHGDHVAVQWVCSDGRGAVEIVNHMAEELVLVNGNR
Ga0256381_10049278	F027156	N/A	RWYDNPLLCDDDDELENDIGIVKKVQHDGTNFFGNDEYDYIVVIDWCKGPHNSVHDQEEYEESIANGEIVVVE