Scaffold Ga0256381_1000849

Overview

Basic Information

• Taxon OID: 3300028018
• Scaffold ID: Ga0256381_1000849
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3749
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 1600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004769	Metagenome / Metatranscriptome	424	Y
F005219	Metagenome / Metatranscriptome	408	Y
F072748	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_10008495	F004769	GAGG	MSAHDKHPTRVSVEVDGFTWRIHGTRRTGQRWHCHLVELVGPLPLDGPVTESLRDKIRTALAKALELPESEVARIPADLILT
Ga0256381_10008496	F072748	AGGAG	MTVYNIGDHIRIAGRCGCVELVKSAKGSIPALALRESSACWHGPRTRVIRVFASGDYLLENGGGAVRLARPDEVCR
Ga0256381_10008497	F005219	GGAGG	MITIRRTCPKCGGEMVVELLRPDPHDTPVLFLVCPCGYWEAAPPDIEAELEDRPRMPGF