Scaffold Ga0256381_1000721

Overview

Basic Information

• Taxon OID: 3300028018
• Scaffold ID: Ga0256381_1000721
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3934
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 1600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F046014	Metagenome	152	N
F086173	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_100072110	F046014	GAGG	MIRKRVYLNKPQAEGLIQIFKRNQLLDLLVYVAIYTKNKSPHYKLCIDCPIDTHPRLSNKLQDILHTLEDRHSKALKQLEWEEYDDAETPIEQVGLTPEFKEYVEDKEKDK
Ga0256381_100072111	F036930	AGGAG	MTEYTHLVEETRRQEAFREWKNKVSYIHANNGKIETKYQDGRTEIEDTSTGKKTYEFPEGYEHEDYREKLFHRFLGFFTA
Ga0256381_10007219	F086173	N/A	MLYKDKFPCDPLLHFDSKDAGTIEWTWRTKPAEAIYWKTYKPKRRDIKILSRVTPEQRKKVTTELYQSIIQTEHPPTTKQAKVRTL