Scaffold Ga0256381_1000357

Overview

Basic Information

• Taxon OID: 3300028018
• Scaffold ID: Ga0256381_1000357
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4835
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 1600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F012399	Metagenome	281	Y
F051056	Metagenome / Metatranscriptome	144	Y
F068118	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_10003573	F012399	GGA	MVIQNINGVKPFVIQRRRAILQFSDPDYEGLHVETRLDVDLKTFLDLQMLAGNADPEHLRAAFCMFGDEILENWNLEDEDGRVLTADAEGFLALPPSLGTAILGAWTEAATTAGEASASE
Ga0256381_10003576	F008778	GAGG	LSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGTPVLAYWLTGRTNDFETLGDIGSRVSVMVRAYFRMQDAPDVRESIEEEVWDAMYQIDSQLRSDADLGGNVSDSSVGAATVGYQNMSGGVFRTVTVPYEMELLGEVTITP
Ga0256381_10003577	F051056	N/A	MPPTPTTSFKLKGPMFEKPTQVGLGFAEAVNRGLLDLATFEGSNKVKEQLYPGHGRVTGNLRNHISASKVRDYLVQIDAGEARYGANLIYSNWIEGIGSRNKTSVFKGYQMFQNAYDHIQNNPKLYEEYIGDALIEAFD
Ga0256381_10003579	F068118	GGAG	MPRAKCVQNVTFGATGEVYEAGQTYDVPAATLKRYPDYFKIRKTAENKQVETSENK