NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256381_1000357

Scaffold Ga0256381_1000357


Overview

Basic Information
Taxon OID3300028018 Open in IMG/M
Scaffold IDGa0256381_1000357 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4835
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)1600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008778Metagenome / Metatranscriptome328Y
F012399Metagenome281Y
F051056Metagenome / Metatranscriptome144Y
F068118Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0256381_10003573F012399GGAMVIQNINGVKPFVIQRRRAILQFSDPDYEGLHVETRLDVDLKTFLDLQMLAGNADPEHLRAAFCMFGDEILENWNLEDEDGRVLTADAEGFLALPPSLGTAILGAWTEAATTAGEASASE
Ga0256381_10003576F008778GAGGLSRSGALAQIDTLLAAISDPAFVAVYRGEPLAISGTPVLAYWLTGRTNDFETLGDIGSRVSVMVRAYFRMQDAPDVRESIEEEVWDAMYQIDSQLRSDADLGGNVSDSSVGAATVGYQNMSGGVFRTVTVPYEMELLGEVTITP
Ga0256381_10003577F051056N/AMPPTPTTSFKLKGPMFEKPTQVGLGFAEAVNRGLLDLATFEGSNKVKEQLYPGHGRVTGNLRNHISASKVRDYLVQIDAGEARYGANLIYSNWIEGIGSRNKTSVFKGYQMFQNAYDHIQNNPKLYEEYIGDALIEAFD
Ga0256381_10003579F068118GGAGMPRAKCVQNVTFGATGEVYEAGQTYDVPAATLKRYPDYFKIRKTAENKQVETSENK

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