Scaffold Ga0256381_1000049

Overview

Basic Information

• Taxon OID: 3300028018
• Scaffold ID: Ga0256381_1000049
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11817
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 1600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035959	Metagenome / Metatranscriptome	171	Y
F037054	Metagenome	168	N
F051056	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_100004913	F051056	N/A	MATPTTSFKLKGPMFETGAQVSLGFAEAVNRGLLDLATFEGANRVKEELYPGHGRVTGKLRGQVMASKVQDYLVQVDAGEAQYGSNLIYSSWVEGISSRNRARPGFPGYGMFQNAYDHINNNPQLYEDYIGDALIEAFD
Ga0256381_100004915	F035959	GGAGG	VGLRPRALAGRTCMPKAKSLVNVTFGATGEVYELGRTYDVPAELLKKYPDYFKVSKAAVNKQADTEENK
Ga0256381_10000495	F037054	AGGAG	MTNDEALDILAAKRSAVNAAINGLNEYRSQSGDWKTDIATTKMTAVKANATTVGADIAAWDGSDSA