Scaffold Ga0265356_1005193

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265356_1005193

Scaffold Ga0265356_1005193

Overview

Basic Information
Taxon OID	3300028017 Open in IMG/M
Scaffold ID	Ga0265356_1005193 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1564
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9992	Long. (^o)	10.7901	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003382	Metagenome / Metatranscriptome	490	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265356_10051933	F003382	AGGAG	MNSWVGFYRDGRGAGIRLQLCMAYNFRSFARSSPWAAELVAAAVGLLLGLALMPVLIFYAGLAALGRYDGASLGRLYSSLFTGLREASIASWVVLLGPYGLYLMFRALRGWWRASAKFD

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