NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265354_1011046

Scaffold Ga0265354_1011046


Overview

Basic Information
Taxon OID3300028016 Open in IMG/M
Scaffold IDGa0265354_1011046 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F013120Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0265354_10110462F013120N/AMFVYELTSLEGFMEYFRFDHPPGRLVLCDRANCEDIADYLEINEQGREDFVCATHTSRERHASVLPKGVAHAERHGNPTAA
Ga0265354_10110463F000042N/ATKFVVKLSRGATRAPEFVLRIDRTPIQTTTNRKLALVMGKFVAEDTIISLQNSRRVPELIAVQVECSQLAV

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