Basic Information | |
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Taxon OID | 3300028016 Open in IMG/M |
Scaffold ID | Ga0265354_1000101 Open in IMG/M |
Source Dataset Name | Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14876 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (38.46%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Norway: Oslo | |||||||
Coordinates | Lat. (o) | 59.9979 | Long. (o) | 10.7895 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000624 | Metagenome / Metatranscriptome | 977 | Y |
F000703 | Metagenome / Metatranscriptome | 928 | Y |
F000781 | Metagenome / Metatranscriptome | 895 | Y |
F006229 | Metagenome / Metatranscriptome | 378 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265354_100010110 | F000781 | N/A | MLTVAQLAPIKDRDPYLYETLTKIVASVNATSQAAGVDPSTPAPAPTAVASINVQASNGWFDLSVTDPSNARPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSMPSAPVTFGSPPTAVAGGGTTGPAPLPSSGSGVLPNGQVRGGNGFGINPGSRITRQTTL |
Ga0265354_100010112 | F006229 | AGG | MATATENSTASLVNISMEKWPPRHRTYFGSLQIISPGEGEAFAITPIHGCNGSMDMGDRRMVDYRVTAREVAEDIAREINGDSGEGSFHGVFVAAGETPTESELADARRRLEEFHLRLVAAADLEWERTRNPMFITDLERRAARQLNLEKPWLYNSKPQAECPVCAEKIKHGVAVCRSCGAILDREKAAQYGLGFSEKSRRGGSPNQNQSKAEDQLYNAGK |
Ga0265354_10001016 | F000624 | GAG | MPIHWSMIVAAIVPVGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYAALHAIARKQGIVPSETPLVRFVELNGRRHRD |
Ga0265354_10001019 | F000703 | N/A | MIREYMEGDLAALRAIHALQGFEYALPDLSNPLFVTKLILSEREPSHSAERDAGEGAATSFAPAQEKIIGAALLRLTAEAYLLLDPNTGTPRERWHWLLQLHAATERDAWQRGLEDVHAWLPPPIAQKFGKRITNLGWNRDDAWTPYCKRLTASL |
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