Scaffold Ga0265354

Basic Information
Taxon OID	3300028016 Open in IMG/M
Scaffold ID	Ga0265354_1000101 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300028016 Open in IMG/M

Scaffold ID

Ga0265354_1000101 Open in IMG/M

Source Dataset Name

Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14876
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14876

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (38.46%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Norway: Oslo

Coordinates

Lat. (^o)

59.9979

Long. (^o)

10.7895

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F006229	Metagenome / Metatranscriptome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265354_100010110	F000781	N/A	MLTVAQLAPIKDRDPYLYETLTKIVASVNATSQAAGVDPSTPAPAPTAVASINVQASNGWFDLSVTDPSNARPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSMPSAPVTFGSPPTAVAGGGTTGPAPLPSSGSGVLPNGQVRGGNGFGINPGSRITRQTTL
Ga0265354_100010112	F006229	AGG	MATATENSTASLVNISMEKWPPRHRTYFGSLQIISPGEGEAFAITPIHGCNGSMDMGDRRMVDYRVTAREVAEDIAREINGDSGEGSFHGVFVAAGETPTESELADARRRLEEFHLRLVAAADLEWERTRNPMFITDLERRAARQLNLEKPWLYNSKPQAECPVCAEKIKHGVAVCRSCGAILDREKAAQYGLGFSEKSRRGGSPNQNQSKAEDQLYNAGK
Ga0265354_10001016	F000624	GAG	MPIHWSMIVAAIVPVGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYAALHAIARKQGIVPSETPLVRFVELNGRRHRD
Ga0265354_10001019	F000703	N/A	MIREYMEGDLAALRAIHALQGFEYALPDLSNPLFVTKLILSEREPSHSAERDAGEGAATSFAPAQEKIIGAALLRLTAEAYLLLDPNTGTPRERWHWLLQLHAATERDAWQRGLEDVHAWLPPPIAQKFGKRITNLGWNRDDAWTPYCKRLTASL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0265354_1000101

Overview

Ecosystem & Geography

Associated Families

Sequences