NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265353_1004734

Scaffold Ga0265353_1004734


Overview

Basic Information
Taxon OID3300028015 Open in IMG/M
Scaffold IDGa0265353_1004734 Open in IMG/M
Source Dataset NameSoil microbial communities from Maridalen valley, Oslo, Norway - NSE6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.997Long. (o)10.7902Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036881Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0265353_10047341F036881N/AFTVVLPGSGGQQFYSGADVEFDSVHKLFLIAQPDSSSSPSGSTIYVYDIHGNLQETINGFSFSNTFNVVPMHIALNPSLRSGYVDGPDSGVTEIQNFTY

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