Scaffold Ga0228674_1091006

Overview

Basic Information

• Taxon OID: 3300028008
• Scaffold ID: Ga0228674_1091006
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 1D_r
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1076
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F074150	Metagenome / Metatranscriptome	120	N
F075986	Metagenome / Metatranscriptome	118	Y
F077246	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228674_10910061	F050370	GGAG	MYQHEVYIPFAVGKQVFEDAKELLTTIHGGCTAYKSIGHWENVGTNTDGTSNSIHMREEVWVVRVVTKDATFSGLNLIESALHKFGETCVMSTTQEINATFRYCEDTNDS
Ga0228674_10910062	F075986	AGGA	MTRNDITYDDDTIADACMRCVNDWDMDTILQFAYDEMFHHYTEVASPESLKYFMEEMENN
Ga0228674_10910064	F074150	AGGAG	MPRYEVTRSYTVACVATVEAESVDKAMRMAFESDLIWKEYDGDYEADVTIEEIDKP
Ga0228674_10910065	F077246	N/A	PESWDEIQQFINEQEHPAYATVLALMVHNYTLSQFSKMGGYSFSEWKQEYLKDA