Scaffold Ga0228674_1078818

Overview

Basic Information

• Taxon OID: 3300028008
• Scaffold ID: Ga0228674_1078818
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 1D_r
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1182
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F050674	Metagenome	145	N
F060351	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228674_10788181	F050674	AGAAGG	MDRIVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHEEYDSAVRRINAHWRMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSEW
Ga0228674_10788182	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICISQLSEEEKSAAFVELYEILKDKLFESTRSLNVEAAYADRCIHWNQRDIDQIKPVNNMRNPWLRFKREFEQCLDGKMPSKNVEIALAWFYAAPYRDDWIAS
Ga0228674_10788183	F060351	N/A	MTTKYDDMVWKILCGMPIEVFDEDDDTVWENETWELVKVRIEGDFKDSRAIGSANLITALNMVHQRLLVDGTKSDDITALSHDIFNNILKKFTEDKLIRKRPENIRKTFQ