Scaffold Ga0228674_1057888

Overview

Basic Information

• Taxon OID: 3300028008
• Scaffold ID: Ga0228674_1057888
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 1D_r
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1441
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F023086	Metagenome / Metatranscriptome	211	Y
F081199	Metagenome / Metatranscriptome	114	N
F081202	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228674_10578881	F081199	AGG	MQTTNWVKFPYFILNATTGKASAFATFEEAEKALILLNTNADDYVVADLNERCIEEI
Ga0228674_10578882	F081202	GAGG	MQNAQIFNATSEDRYTVIATHYTGETMDGCAMFDSVIFDTQTGDTYVQENCMCMNCALLQTEGTAECITYKQYIN
Ga0228674_10578883	F001588	GAGG	MQNTNYVFLNAADAAIVVTVNNVQVAAVYTAAQLAAVFTQHNINISTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALS
Ga0228674_10578884	F023086	AGG	MQNTNTQYNAAVSAAITSFANTIANCAHDSVIENNDYAIHDSVDSIQFLYDNYTKYDNVNCLANAALNSNLDTLVRENIHAQLV