Scaffold Ga0228674_1052625

Overview

Basic Information

• Taxon OID: 3300028008
• Scaffold ID: Ga0228674_1052625
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 1D_r
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1535
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006728	Metagenome / Metatranscriptome	366	Y
F008114	Metagenome	339	Y
F035551	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228674_10526252	F006728	AGAAGG	MAKIDFNNIVIRHKGRTISIAQHWSRTSEGDFLNAQEIADVDKLDHDDYDPIRFDDTIDGLINALQAVKQEIDL
Ga0228674_10526253	F008114	AGGAG	MQLTINTKAFPDADPEMLQEMLGVLPYWVAEYLLLGTDMDIVGFMTERYGFGSLYEFKGSVADDGTYSYPEDPDMPYVGKMNTPNGNVYFYKYAIIALPLPDGKYFVTRMD
Ga0228674_10526254	F035551	AGGA	MKLRELTQALANGDDVRWSKDGYRVQWENLLNGPAITIRYTANGFGGAMAGSEMKDCYIKETTT