Scaffold Ga0228674_1016639

Overview

Basic Information

• Taxon OID: 3300028008
• Scaffold ID: Ga0228674_1016639
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 1D_r
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3203
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038423	Metagenome	166	Y
F040181	Metagenome	162	N
F060346	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228674_10166392	F038423	GAG	MTDHDNFIFNLERKQTRVREAIKAYKKQYLSDTASPPPKTKPDRGTKLKSKLLGK
Ga0228674_10166394	F040181	AGGAG	MNFNWLGNDGDIYRSLKGIANKGGYFGSINQANFWMRCVQESGVHVGPGFSWDDSVELEPGEFMFFCEGSIGGDYNTQYGVQRGWGRKTRYKTWGFVVDAAGVSLIYQLYRSYNDDEGGSYANGKRTEVIWRRDNAQVEATIAGFEAIRAEREAKIAEAKAQSKYVGEIGERIDIEGVARLVATRDGRWGTTNLYIIKTSDGNTLKYSGTNHYGKLSKITGRFTVKQHTEYNGELQTVINRPHKVESESLDDTND
Ga0228674_10166398	F060346	GGA	MALDMEEIVGESQFHKSVMYCYNDRTHSFMFYTPSGDGKQIIPIGMFSPIVEEEIPYDPAALVELIADFMSREKHTFDIDVI