NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228674_1006062

Scaffold Ga0228674_1006062


Overview

Basic Information
Taxon OID3300028008 Open in IMG/M
Scaffold IDGa0228674_1006062 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5958
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017048Metagenome / Metatranscriptome243Y
F031650Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0228674_10060622F031650N/AMDTQMDIMTPTAFDDLKKAYIDAIPAGDALKQQLKSHNKEQKARLNAIHAYMRENNIMTEDIGGVTFEREEKTTVSVNMKTLEEIIENPADLEQYKRDHAKTKESLKVRKPKRQRTEE
Ga0228674_10060624F017048GAGMSSNFNYQPSKSSLRADTVVEFVNRSLLDFKMNEIPGMGPASIQKFSDHGIYTPAQIVAKFLSFVDSPEATAQDVCEEFYNWANPIMGKANTHNLTFALANYAGEHGLFRYE
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