NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228674_1004012

Scaffold Ga0228674_1004012


Overview

Basic Information
Taxon OID3300028008 Open in IMG/M
Scaffold IDGa0228674_1004012 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7528
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F033012Metagenome178N
F058949Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0228674_100401213F058949N/AMFDNNSYEYKKAIRAKAAKAFGPTLKLDLFLEFIGFWDARQYKNANEIRTEAKDMHLYKVVSFMNQYTDV
Ga0228674_10040122F033012N/AMQKATVTAAQPTGQWEGQYGVLYTFDVTLSDGTAGSVNSKSPQFRFNIGDEVEYEIPGPGKLKVNRPNPMGNTFGNNTGGASTSYSSNKKDYTKQNGLQAACTFLNGSKATKEQIVALADYFATWLKGSAAPQVQQVSHAESRPAPAPAPAPAAAPTFPGDDLPF
Ga0228674_10040128F009493N/AMKTRKNKEIVLMLGKVPSLNSFYAGSHWTKRKKAKDAALKEVKEQLGFNQGPAYNSFRVTANVRYRYDLDNSIIAVKFTSDALKALGWIKDDSPKYFRHLLLVWKESLPANTAEIIITLSDEHPE
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