Scaffold Ga0233413_10032711

Overview

Basic Information

• Taxon OID: 3300027996
• Scaffold ID: Ga0233413_10032711
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1968
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004404	Metagenome / Metatranscriptome	439	Y
F026711	Metagenome	197	Y
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233413_100327115	F026711	AGGA	MTKRISQYDAQMVADWFNGSNLVHSSIADNKKIKKLFEQSEKLRQKAHKIIVDDDTWKFAFARGNQRKLKVKYNYEREK
Ga0233413_100327116	F004404	GAGG	MSNNSSYDKLNKTIKEFNDYLAKINKEIDLNQHDLKIHYDYDLVPLPDDIINETNRKEK
Ga0233413_100327119	F087744	AGG	MKKNILVKFDLQIGEQSFSDQYIFYNKTTDYNYCKQFWGLKNKNELDEGVYWDNQMLNAISVYSTQEITNEEVKTLQKLGVA