Scaffold Ga0233413_10001304

Overview

Basic Information

• Taxon OID: 3300027996
• Scaffold ID: Ga0233413_10001304
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 10967
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (40.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022459	Metagenome / Metatranscriptome	214	Y
F043289	Metagenome / Metatranscriptome	156	Y
F057993	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233413_1000130412	F057993	GAG	MRYNNVEFRPATEVRSAEIIAWNYSESLGRETCITLCWIKADSEGYYMETVGNRYVEYEDMEVLNHVAKYALRSLNVEFEFKERQY
Ga0233413_1000130413	F022459	GAG	MNEYEEKANAWQEATDNWVKLTLEKYDGYDINELTQVFMRGPFAGWSERMVVELAMGMDDANNKVPRHK
Ga0233413_1000130417	F043289	GGA	MKITIEQHEEILTYKSELDSMDMSELTEKLYGLCIAAGYHPDAVGECFYAKGREMTEHLYPDDKVEEDVVSSGVYDLIQGGWPSVVAKSRYGAERKFNVMAKNCVEYSFEDDGHVGVQRNDDGSLESVDPSGGPYIGIGTNLGEYIHKDLGDLTVTKIKVDEHEAGTYYLTVK