Scaffold Ga0209168_10024875

Overview

Basic Information

• Taxon OID: 3300027986
• Scaffold ID: Ga0209168_10024875
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3347
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F002853	Metagenome / Metatranscriptome	526	Y
F017385	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_100248751	F017385	N/A	RLTAEAYLLLDPKAGTPRQRWQWLLQLHAAAECDAWQRGLEDVHAWLPPPVARNFGKRITQLGWNRDDAWTPYCKRLACPPGNPHP
Ga0209168_100248753	F002853	GGAGG	MGRAQTQTLNLTDQQLANINAQNQQFLNQQQQTGNLLNTQFHSILNNPGLSSADKAAVTGQSQGALASAFDSLQQSAANRAARTNNSAGFSELTDDLARQKAVAEGNQAQQNQLAFTNTAFQRQMSALQGLSGLFGVDSNLLGRTLGIPSQLLNVRANASRPGAGFFTSLGSGVGSTLGALPGALF
Ga0209168_100248754	F000624	N/A	MPIHWSAILTALVPVGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYSALHAIARKQGIEPHEPPLVRFVEFQGHRRHD