Scaffold Ga0209168_10001003

Overview

Basic Information

• Taxon OID: 3300027986
• Scaffold ID: Ga0209168_10001003
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23897
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F042927	Metagenome / Metatranscriptome	157	Y
F098732	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_1000100312	F042927	GGAGG	MRNPTKFCAALFLFVFPIVTAAVAGQASAGAPVNIFKDVLDHKAQIQWKSAPVLGIPSDVCQLFKVCDDKGAPKLVTLPRATEGGQPVGRGLFLTGSKDPKNPDAVVLEHQTVSELYFFLVAPDGSLQKAAYLQQGSTQWLPIASSLAKPVFEKDRNDWHDWIMKLGAAGK
Ga0209168_1000100321	F098732	AGGCGG	MAPAILFVIVFLTIIVWRLLFTSLHRPLVRETGAPEQQHNNILEQGLHILGQNDSDGGNCNAGEQSAETYLHRIVALTGATQRGSSYILNVGKARFHVRERNVKRIPDGADPAWARWETCFHPAHQDMAAEEQIATVLLQLKSNPWLFDSWSTKRELAFKADGQMFNHPK
Ga0209168_1000100322	F000217	AGGAGG	MKAKILTFSSRGDTTLLEYDPATANMEEVNEVIAEYEAKTGAQPFDMATGERIEKVTRKQNEVLMVHPIAGG